OperaMate (version 1.4.0)

cellSigAnalysisPlot: The barplot of enrichment functions

Description

The barplot of enrichment functions

Usage

cellSigAnalysisPlot(chart, prefix = "", type = NULL, fill = "steelblue", outpath = getOption("opm.outpath"), ...)

Arguments

chart

data frame, the functional annotation chart

prefix

character, the prefix of figure name

type

selected domains from chart, e.g. BP.

fill

color of the bars

outpath

directory of output figures, default: getOption("opm.outpath")

...

other arguments for graphical devices

Value

Invisibly the ggplot2 function for barplot

Examples

data(demoCell)
genemap <- read.csv(file.path(system.file("Test", package = "OperaMate"),
"demoData", "genemap.csv"), stringsAsFactors = FALSE)
chart <- cellSigAnalysis(oneCell, genemap, organism = "mmusculus")
op <- options("device")
options("device" = "png")
cellSigAnalysisPlot(chart, type = "BP", outpath = tempdir())
options(op)