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OperaMate (version 1.4.0)

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Description

OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.

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Version

Version

1.4.0

License

GPL (>= 3)

Maintainer

Chenglin Liu

Last Published

February 15th, 2017

Functions in OperaMate (1.4.0)

parseTemplete

Data extraction from one report
cellSig

Hit identification
cellMean

Mean of two cellData objects
expData-class

The expData class
generateReport

Report generation
operaMate

Data process and analysis pipeline
cellData-class

The cellData class
loadAll

Data importing
demoData

Examples of tables and cellData objects
nameParser

Plate information extraction
cellSigAnalysis

Hits function analysis
cellQC

Quality control
cellLoad

Data importing
cellNorm

Data normalization
cellSigPlot

Hits volcano plot
cellSigAnalysisPlot

The barplot of enrichment functions
cellViz

Data visualization
cellNumLoad

Load cell number