OperaMate (version 1.4.0)

generateReport: Report generation

Description

Summarizes all results in the list of cellData objects, and writes out a report to file.

Usage

generateReport(lstCells, genemap = NULL, verbose = FALSE, file = NULL, outpath = getOption("opm.outpath"), plot = TRUE, ...)

Arguments

lstCells

a list of cellData objects

genemap

a data frame, the well-gene specification table

verbose

logical, detailed data will be provided if TRUE

file

the path of the file to generate to

outpath

a character string naming the location the figures to generate to

plot

if TRUE, plot barplot

...

arguments of the graphic device

Value

a data frame with annotated information of each well

Details

This function summarizes the information from all cellData objects, and visualizes the number of the hists if required.

Examples

data(demoCell)
genemap <- read.csv(file.path(system.file("Test", package = "OperaMate"),
"demoData", "genemap.csv"), stringsAsFactors = FALSE)
report <- generateReport(list(oneCell), genemap, verbose = FALSE,
plot = FALSE)
str(report)