⚠️There's a newer version (1.2-1) of this package.Take me there.

PCRedux

Quantitative PCR Machine Learning Toolkit

Installation

PCRedux is available on CRAN. However, you can install the latest development version of the code using the following code:

library("devtools")
install_github("PCRuniversum/PCRedux")

Manual

The manual is available online.

Copy Link

Version

Install

install.packages('PCRedux')

Monthly Downloads

210

Version

1.1-2

License

MIT + file LICENSE

Maintainer

Stefan Roediger

Last Published

May 11th, 2022

Functions in PCRedux (1.1-2)

hookregNL

hookregNL - A function to calculate the slope of amplification curves in the tail region

PCRedux_datasets

The datasets implemented in PCRedux

autocorrelation_test

A function to test for autocorrelation of amplification curve data from a quantitative PCR experiment

decision_modus

A function to get a decision (modus) from a vector of classes

PCRedux-package

PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit

head2tailratio

A function to calculate to head to tail ratio of amplification curve data from a quantitative PCR experiment

encu

A function to calculate numerous features from amplification curve data from a quantitative PCR experiment.

tReem

A function to Group Amplification Curves According to their Shape

armor

armor: fetch errors gently

A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment at the end of the data stream.

qPCR2fdata

A helper function to convert amplification curve data to the fdata format.

earlyreg

A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment.

pcrfit_single

pcrfit_single - A function to extract features from an amplification curve

performeR

Performance analysis for binary classification

mblrr

A function to perform a Local Robust Regression in Ranges defined by Qunantile-filtering

winklR

winklR: A function to calculate the angle based on the first and the second derivative of an amplification curve data from a quantitative PCR experiment.