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PCRedux

Quantitative PCR Machine Learning Toolkit

Installation

PCRedux is available on CRAN. However, you can install the latest development version of the code using the following code:

library("devtools")
install_github("PCRuniversum/PCRedux")

Manual

The manual is available online.

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Version

Install

install.packages('PCRedux')

Monthly Downloads

133

Version

1.1-2

License

MIT + file LICENSE

Maintainer

Stefan Roediger

Last Published

May 11th, 2022

Functions in PCRedux (1.1-2)

hookregNL

hookregNL - A function to calculate the slope of amplification curves in the tail region
PCRedux_datasets

The datasets implemented in PCRedux
autocorrelation_test

A function to test for autocorrelation of amplification curve data from a quantitative PCR experiment
decision_modus

A function to get a decision (modus) from a vector of classes
PCRedux-package

PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit
head2tailratio

A function to calculate to head to tail ratio of amplification curve data from a quantitative PCR experiment
encu

A function to calculate numerous features from amplification curve data from a quantitative PCR experiment.
tReem

A function to Group Amplification Curves According to their Shape
armor

armor: fetch errors gently
humanrater2

Human Rater 2.0
run_PCRedux

PCRedux app
hookreg

A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment at the end of the data stream.
qPCR2fdata

A helper function to convert amplification curve data to the fdata format.
earlyreg

A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment.
pcrfit_single

pcrfit_single - A function to extract features from an amplification curve
performeR

Performance analysis for binary classification
mblrr

A function to perform a Local Robust Regression in Ranges defined by Qunantile-filtering
winklR

winklR: A function to calculate the angle based on the first and the second derivative of an amplification curve data from a quantitative PCR experiment.