humanrater2

Launches graphical user interface for the manual annotation of
large amplification curve data sets, similarly to
the <code><a rd-options="chipPCR" href="/link/humanrater?package=PCRedux&version=1.1-2&to=chipPCR" data-mini-rdoc="chipPCR::humanrater">humanrater</a></code> function.

Extracts features from amplification curve data of quantitative
Polymerase Chain Reactions (qPCR) (Pabinger S. et al. (2014)
<doi:10.1016/j.bdq.2014.08.002>) for machine learning purposes. Helper
functions prepare the amplification curve data for processing as functional
data (e.g., Hausdorff distance) or enable the plotting of amplification
curve classes (negative, ambiguous, positive). The hookreg() and hookregNL()
functions (Burdukiewicz M. et al. (2018) <doi:10.1016/j.bdq.2018.08.001>)
can be used to predict amplification curves with an hook effect-like
curvature. The pcrfit_single() function can be used to extract features
from an amplification curve.

Stefan Roediger

PCRedux

Quantitative Polymerase Chain Reaction (qPCR) Data Mining and
Machine Learning Toolkit

Michal Burdukiewicz

Andrej-Nikolai Spiess

Konstantin A. Blagodatskikh

Dominik Rafacz

humanrater2 function

Any ad-blocking software may cause malfunctions.

Warning 

Launches graphical user interface for the manual annotation of
large amplification curve data sets, similarly to
the <code><a rd-options='chipPCR' href='humanrater'>humanrater</a></code> function.

humanrater2: Human Rater 2.0

Description

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Warning