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PedCNV (version 0.1)

An implementation for association analysis with CNV data.

Description

An implementation for association analysis with CNV data in R. It provides two methods for association study: first, the observed probe intensity measurement can be directly used to detect the association of CNV with phenotypes of interest. Second, the most probable copy number is estimated with the proposed likelihood and the association of the most probable copy number with phenotype is tested. This method can be applied to both the independent and correlated population.

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Install

install.packages('PedCNV')

Monthly Downloads

17

Version

0.1

License

MIT + file LICENSE

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Last Published

January 2nd, 2014

Functions in PedCNV (0.1)

phi

Empirical correlation matrix
STIM

Score test with the intensity value
ClusProc

CNV clustering Procedure
fam

CNV simulated data
STE

Score test with the most probable CNV
plot.clust

Plots clustering result
print.asso

Prints association study results
AssoTestProc

CNV association test procedure
signal

CNV simulated intensity measurements
PedCNV-package

CNV association implementation
print.clust

Prints clustering results
envirX

CNV simulated environmental variables