ProNet (version 1.0.0)

go.profiles: GO enrichment comparison

Description

GO enrichment comparison between networks.

Usage

go.profiles(g_ref, g_comp, color = c("red", "white"), onto = c("MF", "BP", "CC"), mode = c("number", "frequency"), demonstration.number = 10, plot = TRUE, ...)

Arguments

g_ref

Vector of the first set of molecules.

g_comp

Vector of the second set of molecules.

color

Color represent of the two sets.

onto

GO categories, three possible values are MF for GO function, BP for GO process, and CC for GO componet

mode

Mode of the GO vlues, either Frequency or Number.

demonstration.number

Number of the top GOs to display.

plot

Logical value, whether to plot the profiling result (if TRUE) or not (if FALSE).

...

other arguments.

Value

A data frame of the profiling result and plots.

Examples

entrez1<-c("11067","414157","196477","147339","642")
entrez2<-c("121549","51160","83878","11338","196477","9319","608","7015")
go.profiles(entrez1,onto="MF",main="Only Network 1")
go.profiles(entrez1,entrez2,onto="MF",main=c("Network 1 vs 2"))