Learn R Programming

⚠️There's a newer version (1.2.1) of this package.Take me there.

ProjectionBasedClustering (version 1.0.0)

Projection Based Clustering

Description

A clustering approach for every projection method based on the generalized U*-matrix visualization of a topographic map is made available here. The number of clusters and the cluster structure can be estimated by counting the valleys in a topographic map. If the number of clusters and the clustering method are chosen correctly, then the clusters will be well separated by mountains in the visualization. Most projection methods are wrappers for already available methods in R. However, the neighbor retrieval visualizer (NeRV) is based on C++ source code of the 'dredviz' software package and the Curvilinear Component Analysis (CCA) is translated from 'MATLAB' ('SOM Toolbox' 2.0) to R.

Copy Link

Version

Install

install.packages('ProjectionBasedClustering')

Monthly Downloads

753

Version

1.0.0

License

GPL-3

Maintainer

Michael Thrun

Last Published

July 23rd, 2017

Functions in ProjectionBasedClustering (1.0.0)

DefaultColorSequence

Default color sequence for plots
Delaunay4Points

Calculates the adjacency matrix of the delaunay graph for bestmatches in tiled form if BMs are located on a toroid grid
ICA

Independent Component Analysis)
Isomap

Isomap projection method
SammonsMapping

Sammons Mapping
ShepardDiagram

Draw a Shepard diagram
CCA

Curvilinear Component Analysis
Cmeasure

Calculate the C-Measure
ProjectionBasedClustering

automated Clustering approach of the Databonic swarm with abstact U distances
ProjectionPursuit

Projection Pursuit
tSNE

T-distributed Stochastic Neighbor Embedding
KruskalStress

Kruskal stress calculation
MDS

Classical multidimensional scaling of a data matrix
ShortestGraphPathsC

Shortest GraphPaths = geodesic distances
klrank

Computes rank-based smoothed precision/recall
DijkstraSSSP

Dijkstra SSSP
Hepta

Hepta from FCPS
PlotProjectedPoints

Plot Projected Points
ProjectionBasedClustering-package

Projection Based Clustering
NeRV

NeRV projection
PCA

Principal component analysis