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RNOmni (version 0.5.0)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests for continuous outcomes utilizing the rank-based inverse normal transformation (INT). For outcomes whose residual distribution is heavily skewed or enriched for outliers, INT-based tests provided valid inference and improved power. The primary contribution is a rank normal omnibus test (RNOmni), which synthesizes two complementary INT-based approaches. In simulations against non-normal phenotypes, the omnibus test controlled the type I error in the absence of genetic associations, and improved power in the presence of genetic associations. Under the same settings, standard linear regression variously failed to control the type I error in the absence of associations, and was underpowered in the presence of associations.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

1,262

Version

0.5.0

License

GPL-3

Maintainer

Zachary McCaw

Last Published

September 14th, 2018

Functions in RNOmni (0.5.0)

fitOLS

Univariate OLS model.
cov

Correlation
det

Matrix Determinant
rankNorm

Rank-Normalize
BAT

Basic Association Test
matQF

Matrix Quadratic Form
matInv

Matrix Inverse
matIP

Matrix Inner Product
IINT

Indirect-INT
OmniP

Omnibus P-value
RNOmni-help

RNOmni: Rank-Normal Omnibus Association Test
MMP

Matrix Matrix Product
RNOmni

Rank-Normal Omnibus Test
AvgCorr

Average Correlation Estimate.
BootCorr

Bootstrap Correlation Estimate.
DINT

Direct-INT
SchurC

Schur complement