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RNOmni (version 1.0.0)

Rank Normal Transformation Omnibus Test

Description

Inverse normal transformation (INT) based genetic association testing. These tests are recommend for continuous traits with non-normally distributed residuals. INT-based tests robustly control the type I error in settings where standard linear regression does not, as when the residual distribution exhibits excess skew or kurtosis. Moreover, INT-based tests dominate standard linear regression in terms of power. These tests may be classified into two types. In direct INT (D-INT), the phenotype is itself transformed. In indirect INT (I-INT), phenotypic residuals are transformed. The omnibus test (O-INT) adaptively combines D-INT and I-INT into a single robust and statistically powerful approach. See McCaw ZR, Lane JM, Saxena R, Redline S, Lin X. "Operating characteristics of the rank-based inverse normal transformation for quantitative trait analysis in genome-wide association studies" .

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Version

Install

install.packages('RNOmni')

Monthly Downloads

1,262

Version

1.0.0

License

GPL-3

Maintainer

Zachary McCaw

Last Published

October 5th, 2020

Functions in RNOmni (1.0.0)

IINT

Indirect-INT
BAT.WaldTest

Basic Association Wald Test
BasicInputChecks

Basic Input Checks
OINT

Omnibus-INT
CauchyToP

Convert Cauchy Random Variable to P
BAT

Basic Association Test
DINT

Direct-INT
IINT.ScoreTest

Basic Association Score Test
BAT.ScoreTest

Basic Association Score Test
OmniP

Omnibus P-value.
WaldStat

Basic Association Score Test
ScoreStat

Score Statistics
SchurC

Schur complement
RankNorm

Rank-Normalize
RNOmni-help

RNOmni: Rank-Normal Omnibus Association Testing
PtoCauchy

Convert P-value to Cauchy Random
PartitionData

Partition Data
matInv

Matrix Inverse
matIP

Matrix Inner Product
fitOLS

Ordinary Least Squares