modifyReportDF

modifyReportDF-methods

modifyReportDF,ANY,ANY,ANY-method

modifyReportDF,ANY,ANY,DGEExact-method

modifyReportDF,ANY,ANY,DGELRT-method

modifyReportDF,ANY,ANY,DESeqDataSet-method

modifyReportDF,ANY,ANY,DESeqResults-method

modifyReportDF,ANY,ANY,MArrayLM-method

modifyReportDF,ANY,ANY,GeneSet-method

modifyReportDF,ANY,ANY,GOHyperGResult-method


 This function is called after toReportDF (or the overriding.toDF if it
 is specified) in order to transform the basic data.frame into the form
 that will appear in the report. This typically includes transforming
 columns into links, adding image columns, etc. Each class publishable
 by ReportingTools should have either a custom objectToHTML method
 (which supercedes toReportDF and modifyReportDF) or a custom
 toReportDF and modifyReportDF methods which construct a dataframe to
 be placed in the report as an HTML table.


methods

 ~~ other possible keyword(s) ~~ 

The ReportingTools software package enables users to
easily display reports of analysis results generated from
sources such as microarray and sequencing data.  The package
allows users to create HTML pages that may be viewed on a web
browser such as Safari, or in other formats readable by
programs such as Excel.  Users can generate tables with
sortable and filterable columns, make and display plots, and
link table entries to other data sources such as NCBI or larger
plots within the HTML page.  Using the package, users can also
produce a table of contents page to link various reports
together for a particular project that can be viewed in a web
browser.  For more examples, please visit our site: http://
research-pub.gene.com/ReportingTools.

Jason A Hackney

ReportingTools

Tools for making reports in various formats

modifyReportDF-methods function

<dl>
<dt><code>signature(df = "ANY", htmlRep = "ANY", object = "ANY")</code></dt><dd>
The default method is simply a placeholder, and returns the data.frame unchanged.
</dd> </dl>

Methods

This function is called after toReportDF (or the overriding.toDF if it
 is specified) in order to transform the basic data.frame into the form
 that will appear in the report. This typically includes transforming
 columns into links, adding image columns, etc. Each class publishable
 by ReportingTools should have either a custom objectToHTML method
 (which supercedes toReportDF and modifyReportDF) or a custom
 toReportDF and modifyReportDF methods which construct a dataframe to
 be placed in the report as an HTML table.

Decorate the Basic data.frame Representation of an Object

modifyReportDF-methods: Decorate the Basic data.frame Representation of an Object

Description

Arguments

Methods