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ReportingTools (version 2.12.2)

Tools for making reports in various formats

Description

The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.

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Version

Version

2.12.2

License

Artistic-2.0

Maintainer

Jason A Hackney

Last Published

February 15th, 2017

Functions in ReportingTools (2.12.2)

mockRnaSeqData

A counts table of mock RNA-deq data in mouse.
readReport

Read in an Existing Report
makeDESeqDF

Converts DESeq results into a data frame to be published
filename-methods

Methods for getting the name of a file for a CSVFile or HTMLReport.
BaseReport-class

Class "BaseReport"
toReportDF-methods

Class Specific Default Behavior for Transforming Objects to data.frames
makeOldHTMLReport

Creating and initializing an HTMLReport object
ReportHandlers-class

Class "ReportHandlers"
objectToHTML-methods

Transform R objects into HTML form to be inserted in HTML reports
CSVFile

Function for creating and initializing a CSVFile for publishing results
DataPackage

Function for creating and initializing an object of class DataPackage.
HTMLReportRef-class

Class "HTMLReportRef"
finish-methods

Finalizing reports after publishing results
publish-methods

Methods for publishing a variety of data types in selected output formats
custHeaderPanel

Define a header panel with custom JS/CSS for a Shiny app
CSVFile-class

Class "CSVFile"
DataPackage-class

Class "DataPackage"
Link

Create a table of Links
modifyReportDF-methods

Decorate the Basic data.frame Representation of an Object
HTMLReport-class

Class "HTMLReport"
reporting.theme.alternate

Alternate color theme for use in ReportingTools
validConnection

Determine connection validity
reporting.theme

Color theme for use in ReportingTools