toReportDF

toReportDF-methods

toReportDF,ANY-method

toReportDF,data.frame-method

toReportDF,DGEExact-method

toReportDF,DGELRT-method

toReportDF,DESeqDataSet-method

toReportDF,DESeqResults-method

toReportDF,GeneSetCollection-method

toReportDF,GeneSet-method

toReportDF,GOHyperGResult-method

toReportDF,MArrayLM-method

toReportDF,PFAMHyperGResult-method


 The <code>toReportDF</code> generic and its methods are used to transform
 objects into a basic tabular (data.frame) form as part of the two step
 process of preparing to insert them into a report. This function (and
 functions passed to the <code>.toDF</code> argument used to override it) will
 only be called during the default ("ANY") <code>objectToHTML</code>
 method. Non-default <code>objectToHTML</code> methods are expected to perform
 the entire process of creating HTML code from an R object. 


methods

report

 data.frame

The ReportingTools software package enables users to
easily display reports of analysis results generated from
sources such as microarray and sequencing data.  The package
allows users to create HTML pages that may be viewed on a web
browser such as Safari, or in other formats readable by
programs such as Excel.  Users can generate tables with
sortable and filterable columns, make and display plots, and
link table entries to other data sources such as NCBI or larger
plots within the HTML page.  Using the package, users can also
produce a table of contents page to link various reports
together for a particular project that can be viewed in a web
browser.  For more examples, please visit our site: http://
research-pub.gene.com/ReportingTools.

Jason A Hackney

ReportingTools

Tools for making reports in various formats

toReportDF-methods function

The <code>toReportDF</code> generic and its methods are used to transform
 objects into a basic tabular (data.frame) form as part of the two step
 process of preparing to insert them into a report. This function (and
 functions passed to the <code>.toDF</code> argument used to override it) will
 only be called during the default ("ANY") <code>objectToHTML</code>
 method. Non-default <code>objectToHTML</code> methods are expected to perform
 the entire process of creating HTML code from an R object.

Class Specific Default Behavior for Transforming Objects to data.frames

toReportDF-methods: Class Specific Default Behavior for Transforming Objects to data.frames

Description

Arguments

See Also