Learn R Programming

SNFtool (version 2.3.1)

Similarity Network Fusion

Description

Similarity Network Fusion takes multiple views of a network and fuses them together to construct an overall status matrix. The input to our algorithm can be feature vectors, pairwise distances, or pairwise similarities. The learned status matrix can then be used for retrieval, clustering, and classification.

Copy Link

Version

Install

install.packages('SNFtool')

Monthly Downloads

538

Version

2.3.1

License

GPL

Maintainer

Last Published

June 11th, 2021

Functions in SNFtool (2.3.1)

rankFeaturesByNMI

Rank Features by NMI
SNFtool-internal

Internal SNFtool Functions
heatmapPlus

Display heatmap for clusters
spectralClustering

Spectral Clustering
label

Labels for dataL dataset
plotAlluvial

Plot Alluvial
estimateNumberOfClustersGivenGraph

Estimate Number Of Clusters Given Graph
dist2

Pairwise squared Euclidean distances
getColorsForGroups

Obtaining a vector of colors from a numeric vector of group
Data2

Data2
groupPredict

Group Predict
standardNormalization

Standard Normalization
chiDist2

Pairwise Chi-squared distances
calNMI

Mutual Information calculation
dataL

dataL
concordanceNetworkNMI

Concordance Network NMI calculation
displayClusters

Plot given similarity matrix by clusters
displayClustersWithHeatmap

Display the similarity matrix by clusters with some sample information
SNF

Similarity Network Fusion
affinityMatrix

Affinity matrix calculation
Data1

Data1