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Seurat (version 2.0.0)

AssessNodes: Assess Internal Nodes

Description

Method for automating assessment of tree splits over all internal nodes, or a provided list of internal nodes. Uses AssessSplit() for calculation of Out of Bag error (proxy for confidence in split).

Usage

AssessNodes(object, node.list, all.below = FALSE)

Arguments

object

Seurat object

node.list

List of internal nodes to assess and return

all.below

If single node provided in node.list, assess all splits below (and including) provided node .

Value

Returns the Out of Bag error for a random forest classifiers trained on each internal node split or each split provided in the node list.