Seurat (version 2.0.0)

FindConservedMarkers: Finds markers that are conserved between the two groups

Description

Finds markers that are conserved between the two groups

Usage

FindConservedMarkers(object, ident.1, ident.2 = NULL, grouping.var, ...)

Arguments

object

Seurat object

ident.1

Identity class to define markers for

ident.2

A second identity class for comparison. If NULL (default) - use all other cells for comparison.

grouping.var

grouping variable

…

parameters to pass to FindMarkers

Value

Matrix containing a ranked list of putative conserved markers, and associated statistics (p-values within each group and a combined p-value (fisher_pval), percentage of cells expressing the marker, average differences)