Seurat (version 2.0.0)

InitialMapping: Infer spatial origins for single cells

Description

Probabilistically maps single cells based on (imputed) gene expression estimates, a set of mixture models, and an in situ spatial reference map.

Usage

InitialMapping(object, cells.use = NULL)

Arguments

object

Seurat object

cells.use

Which cells to map

Value

Seurat object, where mapping probabilities for each bin are stored in [e-mail]