Seurat (version 2.0.0)

LogNormalize: Normalize raw data

Description

Normalize count data per cell and transform to log scale

Usage

LogNormalize(data, scale.factor = 10000, display.progress = TRUE)

Arguments

data

Matrix with the raw count data

scale.factor

Scale the data. Default is 1e4

display.progress

Print progress

Value

Returns a matrix with the normalize and log transformed data