Seurat (version 2.1.0)

DMEmbed: Diffusion Maps Cell Embeddings Accessor Function

Description

Pull Diffusion maps cell embedding matrix

Usage

DMEmbed(object, dims.use = NULL, cells.use = NULL)

Arguments

object

Seurat object

dims.use

Dimensions to include (default is all stored dims)

cells.use

Cells to include (default is all cells)

Value

Diffusion maps embedding matrix for given cells and DMs

Examples

# NOT RUN {
pbmc_small
pbmc_small <- RunDiffusion(pbmc_small, genes.use = [e-mail])
head(DMEmbed(object = pbmc_small))

# }