Seurat (version 2.1.0)

GenesInCluster: GenesInCluster

Description

After k-means analysis, previously run with DoKMeans, returns a set of genes associated with each cluster

Usage

GenesInCluster(object, cluster.num, max.genes = 1e+06)

Arguments

object

Seurat object. Assumes DoKMeans has already been run

cluster.num

K-means cluster(s) to return genes for

max.genes

max number of genes to return

Value

A vector of genes who are members in the cluster.num k-means cluster(s)

Examples

# NOT RUN {
pbmc_small
# Cluster on genes only
pbmc_small <- DoKMeans(object = pbmc_small, k.genes = 3)
pbmc_small <- GenesInCluster(object = pbmc_small, cluster.num = 1)

# }