Seurat (version 2.1.0)

PrintAlignSubspaceParams: Print AlignSubspace Calculation Parameters

Description

Print the parameters chosen for the latest AlignSubspace calculation for each stored aligned subspace.

Usage

PrintAlignSubspaceParams(object, raw = FALSE)

Arguments

object

Seurat object

raw

Print the entire contents of the calculation settings slot (calc.params) for the AlignSubspace calculation. Default (FALSE) will print a nicely formatted summary.

Value

No return value. Only prints to console.

Examples

# NOT RUN {
# Requires CCA to have previously been run
# As CCA requires two datasets, we will split our test object into two just for this example
pbmc1 <- SubsetData(pbmc_small,cells.use = [e-mail][1:40])
pbmc2 <- SubsetData(pbmc_small,cells.use = [e-mail][41:80])
[e-mail]$group <- "group1"
[e-mail]$group <- "group2"
pbmc_cca <- RunCCA(pbmc1,pbmc2)
pbmc_cca <- AlignSubspace(pbmc_cca,reduction.type = "cca", grouping.var = "group", dims.align = 1:2)
PrintAlignSubspaceParams(object = pbmc_small)
# }
# NOT RUN {
# }