Seurat (version 2.1.0)

ScaleDataR: Old R based implementation of ScaleData. Scales and centers the data

Description

Old R based implementation of ScaleData. Scales and centers the data

Usage

ScaleDataR(object, genes.use = NULL, data.use = NULL, do.scale = TRUE,
  do.center = TRUE, scale.max = 10)

Arguments

object

Seurat object

genes.use

Vector of gene names to scale/center. Default is all genes in object@data.

data.use

Can optionally pass a matrix of data to scale, default is object@data[genes.use,]

do.scale

Whether to scale the data.

do.center

Whether to center the data.

scale.max

Max value to accept for scaled data. The default is 10. Setting this can help reduce the effects of genes that are only expressed in a very small number of cells.

Value

Returns a seurat object with [e-mail] updated with scaled and/or centered data.

Examples

# NOT RUN {
pbmc_small <- ScaleDataR(object = pbmc_small)
# }
# NOT RUN {
# }