Seurat (version 2.1.0)

VizDimReduction: Visualize Dimensional Reduction genes

Description

Visualize top genes associated with reduction components

Usage

VizDimReduction(object, reduction.type = "pca", dims.use = 1:5,
  num.genes = 30, use.full = FALSE, font.size = 0.5, nCol = NULL,
  do.balanced = FALSE)

Arguments

object

Seurat object

reduction.type

Reduction technique to visualize results for

dims.use

Number of dimensions to display

num.genes

Number of genes to display

use.full

Use reduction values for full dataset (i.e. projected dimensional reduction values)

font.size

Font size

nCol

Number of columns to display

do.balanced

Return an equal number of genes with + and - scores. If FALSE (default), returns the top genes ranked by the scores absolute values

Value

Graphical, no return value

Examples

# NOT RUN {
VizDimReduction(object = pbmc_small)

# }