Seurat (version 2.3.4)

CellPlot: Cell-cell scatter plot

Description

Creates a plot of scatter plot of genes across two single cells. Pearson correlation between the two cells is displayed above the plot.

Usage

CellPlot(object, cell1, cell2, gene.ids = NULL, col.use = "black",
  nrpoints.use = Inf, pch.use = 16, cex.use = 0.5, do.hover = FALSE,
  do.identify = FALSE, ...)

Arguments

object

Seurat object

cell1

Cell 1 name (can also be a number, representing the position in [e-mail])

cell2

Cell 2 name (can also be a number, representing the position in [e-mail])

gene.ids

Genes to plot (default, all genes)

col.use

Colors to use for the points

nrpoints.use

Parameter for smoothScatter

pch.use

Point symbol to use

cex.use

Point size

do.hover

Enable hovering over points to view information

do.identify

Opens a locator session to identify clusters of cells. points to reveal gene names (hit ESC to stop)

…

Additional arguments to pass to smoothScatter

Value

No return value (plots a scatter plot)

Examples

# NOT RUN {
CellPlot(object = pbmc_small, cell1 = 'ATAGGAGAAACAGA', cell2 = 'CATCAGGATGCACA')

# }