Seurat (version 2.3.4)

WilcoxDETest: Differential expression using Wilcoxon Rank Sum

Description

Identifies differentially expressed genes between two groups of cells using a Wilcoxon Rank Sum test

Usage

WilcoxDETest(object, cells.1, cells.2, genes.use = NULL, print.bar = TRUE,
  assay.type = "RNA", ...)

Arguments

object

Seurat object

cells.1

Group 1 cells

cells.2

Group 2 cells

genes.use

Genes to use for test

print.bar

Print a progress bar

assay.type

Type of assay to perform DE for (default is RNA)

...

Extra parameters passed to wilcox.test

Value

Returns a p-value ranked matrix of putative differentially expressed genes.

Examples

# NOT RUN {
pbmc_small
WilcoxDETest(pbmc_small, cells.1 = WhichCells(object = pbmc_small, ident = 1),
            cells.2 = WhichCells(object = pbmc_small, ident = 2))

# }