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Returns a set of genes, based on the JackStraw analysis, that have statistically significant associations with a set of PCs.
PCASigGenes( object, pcs.use, pval.cut = 0.1, use.full = FALSE, max.per.pc = NULL )
Seurat object
PCS to use.
P-value cutoff
Use the full list of genes (from the projected PCA). Assumes that ProjectDim has been run. Currently, must be set to FALSE.
ProjectDim
Maximum number of genes to return per PC. Used to avoid genes from one PC dominating the entire analysis.
A vector of genes whose p-values are statistically significant for at least one of the given PCs.
ProjectDim JackStraw
JackStraw
# NOT RUN { data("pbmc_small") PCASigGenes(pbmc_small, pcs.use = 1:2) # }
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