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XMRF (version 1.0)

Markov Random Fields for High-Throughput Genetics Data

Description

Fit Markov Networks to a wide range of high-throughput genomics data.

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Version

Install

install.packages('XMRF')

Monthly Downloads

10

Version

1.0

License

GPL-2

Maintainer

Ying-Wooi Wan

Last Published

June 25th, 2015

Functions in XMRF (1.0)

brcadat

RNA-Seq Data of BRCA Patients from TCGA
ggm.fit

Fitted Gaussian Graphical Models
plotGML

Plot Network in GML
GMS

Graphical Models Object
XMRF.Sim

Generate simulated data from XMRF models
XMRF-package

A R Package to Fit Markov Networks to High-throughput Genomics Data
lambdaMax

Maximum lambda
XMRF

Markov Random Fields for Exponential Family Distributions
processSeq

Process Sequencing Data for Poisson-based MRFs
plotNet

Plot Network
plot.GMS

Plot GMS Object