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adephylo (version 1.1-16)

Exploratory Analyses for the Phylogenetic Comparative Method

Description

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) .

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Version

Install

install.packages('adephylo')

Monthly Downloads

4,531

Version

1.1-16

License

GPL (>= 2)

Maintainer

Aurélie Siberchicot

Last Published

October 6th, 2023

Functions in adephylo (1.1-16)

Phylogeny and quantitative traits of flowers

Orthonormal decomposition of variance

Phylogenetic principal component analysis

Phylogeny and quantitative traits of birds

Phylogenetic and quantitative traits of amazonian palm trees

Computes Moran's index for a variable

orthobasis.phylo

Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix

Phylogeny and quantitative traits of teleos fishes

Low-level auxiliary functions for adephylo

Phylogeny and quantitative traits of ungulates.

Compute some phylogenetic proximities between tips

Phylogeny and quantitative traits of flowers

Find the shortest path between tips of a tree

Graphical display of phylogeny and traits

Define partitions of tips according from a tree

Phylogeny and quantitative traits of carnivora

Abouheif's test based on Moran's I

List tips descendings from all nodes of a tree

List direct descendants for all nodes of a tree

Phylogeny and quantative trait of carnivora

Phylogeny and quantitative traits of lizards

Compute some phylogenetic distance between tips

adephylo-package

The adephylo package

Compute the distance of tips to the root

Fan-like phylogeny with possible representation of traits on tips