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adephylo (version 1.1-17)

Exploratory Analyses for the Phylogenetic Comparative Method

Description

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) .

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Install

install.packages('adephylo')

Monthly Downloads

8,083

Version

1.1-17

License

GPL (>= 2)

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Maintainer

Aurélie Siberchicot

Last Published

March 14th, 2025

Functions in adephylo (1.1-17)

orthogram

Orthonormal decomposition of variance
palm

Phylogenetic and quantitative traits of amazonian palm trees
orthobasis.phylo

Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix
tithonia

Phylogeny and quantitative traits of flowers
.tipToRoot

Low-level auxiliary functions for adephylo
mjrochet

Phylogeny and quantitative traits of teleos fishes
treePart

Define partitions of tips according from a tree
ungulates

Phylogeny and quantitative traits of ungulates.
moran.idx

Computes Moran's index for a variable
ppca

Phylogenetic principal component analysis
table.phylo4d

Graphical display of phylogeny and traits
sp.tips

Find the shortest path between tips of a tree
procella

Phylogeny and quantitative traits of birds
proxTips

Compute some phylogenetic proximities between tips
carni70

Phylogeny and quantitative traits of carnivora
abouheif.moran

Abouheif's test based on Moran's I
distTips

Compute some phylogenetic distance between tips
listDD

List direct descendants for all nodes of a tree
distRoot

Compute the distance of tips to the root
bullseye

Fan-like phylogeny with possible representation of traits on tips
adephylo-package

The adephylo package
maples

Phylogeny and quantitative traits of flowers
lizards

Phylogeny and quantitative traits of lizards
carni19

Phylogeny and quantative trait of carnivora
listTips

List tips descendings from all nodes of a tree