unique.multiPhylo

an object of class <code>"multiPhylo"</code>.

unused (for compatibility with the generic).

incomparables

a logical specifying whether to consider the edge
    lengths in the comparisons; the default is <code>FALSE</code>.

use.edge.length

a logical specifying whether to consider the tip
    labels in the comparisons; the default is <code>TRUE</code>.

use.tip.label

further arguments passed to or from other methods.


  This function scans a list of trees, and returns a list with the
  duplicate trees removed. By default the labelled topologies are
  compared.


manip

Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle, MAFFT) whose results are returned into R.

unique.multiPhylo: Revomes Duplicate Trees

Description

Usage

Arguments

Value

See Also

Examples