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aroma.apd: A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]

Installation

R package aroma.apd is available on CRAN and can be installed in R as:

install.packages("aroma.apd")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use:

remotes::install_github("HenrikBengtsson/aroma.apd", ref="develop")

This will install the package from source.

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Version

Install

install.packages('aroma.apd')

Monthly Downloads

573

Version

0.7.0

License

LGPL (>= 2.1)

Issues

0

Pull Requests

0

Stars

0

Forks

0

Maintainer

Henrik Bengtsson

Last Published

June 23rd, 2023

Functions in aroma.apd (0.7.0)

writeApd

Writes an APD probe data file
aroma.apd-package

Package aroma.apd
Non-documented objects

Non-documented objects
gtypeCelToPQ

Function to immitate Affymetrix' gtype_cel_to_pq software
createApd

Creates an Affymetrix probe data (APD) file
updateApdUnits

Updates an Affymetrix probe data (APD) file by units (probesets)
readApd

Reads an Affymetrix probe data (APD) file
readApdRectangle

Reads a spatial subset of probe-level data from Affymetrix APD files
findApdMap

Search for APD map files in multiple directories
readApdUnits

Reads Affymetrix probe data (APD) as units (probesets)
celToApd

Generates an APD file from an Affymetrix CEL file
cdfToApdMap

Generates an APD read map file from an Affymetrix CDF file
writeApdMap

Writes an APD probe map file
readApdHeader

Reads the header of an Affymetrix probe data (APD) file
readApdMap

Reads an APD probe map file
updateApd

Updates an Affymetrix probe data (APD) file
updateApdHeader

Updates the header of an Affymetrix probe data (APD) file