plot.ash

Plot the cdf of the underlying fitted distribution

The R package 'ashr' implements an Empirical Bayes
approach for large-scale hypothesis testing and false discovery
rate (FDR) estimation based on the methods proposed in
M. Stephens, 2016, "False discovery rates: a new deal",
<DOI:10.1093/biostatistics/kxw041>. These methods can be applied
whenever two sets of summary statistics---estimated effects and
standard errors---are available, just as 'qvalue' can be applied
to previously computed p-values. Two main interfaces are
provided: ash(), which is more user-friendly; and ash.workhorse(),
which has more options and is geared toward advanced users. The
ash() and ash.workhorse() also provides a flexible modeling
interface that can accommodate a variety of likelihoods (e.g.,
normal, Poisson) and mixture priors (e.g., uniform, normal).

Peter Carbonetto

ashr

Methods for Adaptive Shrinkage, using Empirical Bayes

Matthew Stephens

Chaoxing Dai

David Gerard

Mengyin Lu

Lei Sun

Jason Willwerscheid

Nan Xiao

Mazon Zeng

plot.ash function

<dl><dt>x</dt>
<dd>the fitted ash object</dd>
<dt>...</dt>
<dd>Arguments to be passed to methods,such as graphical parameters (see <code><a href="/link/plot?package=ashr&version=2.2-63" data-mini-rdoc="ashr::plot">plot</a></code>)</dd>
<dt>xmin</dt>
<dd>xlim lower range, default is the lowest value of betahat</dd>
<dt>xmax</dt>
<dd>xlim upper range, default is the highest value of betahat</dd></dl>

Arguments

Plot method for ash object — plot.ash

<dl>

<dt>x</dt>
<dd>the fitted ash object</dd>


<dt>...</dt>
<dd>Arguments to be passed to methods,such as graphical parameters (see <code><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></code>)</dd>


<dt>xmin</dt>
<dd>xlim lower range, default is the lowest value of betahat</dd>


<dt>xmax</dt>
<dd>xlim upper range, default is the highest value of betahat</dd>

</dl>

Plot method for ash object

plot.ash: Plot method for ash object

Description

Usage

Arguments

Details