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autoGO (version 0.9.1)

Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations

Description

Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) . The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.

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Version

Install

install.packages('autoGO')

Monthly Downloads

471

Version

0.9.1

License

MIT + file LICENSE

Maintainer

Fabio Ticconi

Last Published

February 13th, 2023

Functions in autoGO (0.9.1)

heatmapGO

HeatmapGO
autoGO

autoGO: Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations
barplotGO

barplotGO
lolliGO

lolliGO
choose_database

choose_database
deseq_analysis

Differential Gene Expression Analysis
filtering_DE

Filtering DESeq2 results
comparisons

Example comparison data.
groups

Example group data.
counts

Example raw count data.
volcanoplot

Volcano Plot
read_enrich_tables

Read enrichment results from tables
read_gene_lists

Read all the genes lists