comparisons

It is the comparison table needed by DESeq2, constituted by the
column treatment and by the column control.

datasets

Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) <doi:10.1186/s13059-014-0550-8>. The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.

Fabio Ticconi

autoGO

Auto-GO: Reproducible, Robust and High Quality Ontology
Enrichment Visualizations

Isabella Grassucci

Eleonora Sperandio

Alice Massacci

Lorenzo D'Ambrosio

Matteo Pallocca

comparisons function

A data frame with 6 rows and 2 variable:

Format

Example comparison data. — comparisons

Example comparison data.

comparisons: Example comparison data.

Description

Usage

Arguments

Format