EColiNetwork


  This list contains the TF-target graph used in the vignette.


datasets

Expression levels of mRNA molecules are regulated by
different processes, comprising inhibition or activation by
transcription factors and post-transcriptional degradation by
microRNAs. birta (Bayesian Inference of Regulation of
Transcriptional Activity) uses the regulatory networks of TFs
and miRNAs together with mRNA and miRNA expression data to
predict switches in regulatory activity between two conditions.
A Bayesian network is used to model the regulatory structure
and Markov-Chain-Monte-Carlo is applied to sample the activity
states.

Benedikt Zacher

birta

Bayesian Inference of Regulation of Transcriptional Activity

EColiNetwork function

A list containing the target gene sets of 160 TFs.

Format

This TF-target graph was taken from (R. Castelo and A. Roverato, 2009). It is a pre-filtered version of RegulonDB 6.1.

Source

This list contains the TF-target graph used in the vignette.

EColiNetwork: Example TF-target graph from Regulon DB.

Description

Usage

Arguments

Format

Source

References