TFexpr


  This data set gives expression values for the 160 TF of the TF-target graph EColiNetwork used in the vignette. 


datasets

Expression levels of mRNA molecules are regulated by
different processes, comprising inhibition or activation by
transcription factors and post-transcriptional degradation by
microRNAs. birta (Bayesian Inference of Regulation of
Transcriptional Activity) uses the regulatory networks of TFs
and miRNAs together with mRNA and miRNA expression data to
predict switches in regulatory activity between two conditions.
A Bayesian network is used to model the regulatory structure
and Markov-Chain-Monte-Carlo is applied to sample the activity
states.

Benedikt Zacher

birta

Bayesian Inference of Regulation of Transcriptional Activity

TFexpr function

ExpressionSet. Rownames in the assayData correspond to entries in TF-target graph.

Format

See EColiOxygen and EColiNetwork (see reference for details).

Source

This data set gives expression values for the 160 TF of the TF-target graph EColiNetwork used in the vignette.

TFexpr: Transcription factor expression values for the aerobic-anaerobic growth experiment.

Description

Usage

Arguments

Format

Source

References