birta-methods

birta,ExpressionSet,ExpressionSet,ExpressionSet-method

birta,ExpressionSet,ExpressionSet,missing-method

birta,ExpressionSet,missing,ExpressionSet-method

birta,ExpressionSet,missing,missing-method

birta,matrix,matrix,matrix-method

birta,matrix,matrix,missing-method

birta,matrix,missing,matrix-method

birta,matrix,missing,missing-method


Generic methods for function <code>birta</code> in package <span class="pkg">birta</span>. The expression data can be stored in a matrix or an ExpressionSet.


methods

htest

Expression levels of mRNA molecules are regulated by
different processes, comprising inhibition or activation by
transcription factors and post-transcriptional degradation by
microRNAs. birta (Bayesian Inference of Regulation of
Transcriptional Activity) uses the regulatory networks of TFs
and miRNAs together with mRNA and miRNA expression data to
predict switches in regulatory activity between two conditions.
A Bayesian network is used to model the regulatory structure
and Markov-Chain-Monte-Carlo is applied to sample the activity
states.

Benedikt Zacher

birta

Bayesian Inference of Regulation of Transcriptional Activity

birta-methods function

<dl>
The following signatures make sure, that the arguments, storing the expression data are in the correct format. 
<dt><code>signature(dat.mRNA = "ExpressionSet", dat.miRNA = "ExpressionSet", TFexpr = "ExpressionSet")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "ExpressionSet", dat.miRNA = "ExpressionSet", TFexpr = "missing")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "ExpressionSet", dat.miRNA = "missing", TFexpr = "ExpressionSet")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "ExpressionSet", dat.miRNA = "missing", TFexpr = "missing")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "matrix", dat.miRNA = "matrix", TFexpr = "matrix")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "matrix", dat.miRNA = "matrix", TFexpr = "missing")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "matrix", dat.miRNA = "missing", TFexpr = "matrix")</code></dt><dd> </dd> <dt><code>signature(dat.mRNA = "matrix", dat.miRNA = "missing", TFexpr = "missing")</code></dt><dd> </dd> </dl>

Methods

Generic methods for function <code>birta</code> in package <pkg>birta</pkg>. The expression data can be stored in a matrix or an ExpressionSet.

Methods for Function <code>birta</code> in Package <pkg>birta</pkg>

Methods for Function <code>birta</code> in Package <span class="pkg">birta</span>

birta-methods: Methods for Function `birta` in Package birta

Description

Arguments

Methods