limmaAnalysis-methods

limmaAnalysis,ExpressionSet,matrix,character-method

limmaAnalysis,matrix,matrix,character-method


Generic methods for function <code>limmaAnalysis</code> in package <span class="pkg">birta</span>. The expression data can be stored in a matrix or an ExpressionSet.


manip

methods

Expression levels of mRNA molecules are regulated by
different processes, comprising inhibition or activation by
transcription factors and post-transcriptional degradation by
microRNAs. birta (Bayesian Inference of Regulation of
Transcriptional Activity) uses the regulatory networks of TFs
and miRNAs together with mRNA and miRNA expression data to
predict switches in regulatory activity between two conditions.
A Bayesian network is used to model the regulatory structure
and Markov-Chain-Monte-Carlo is applied to sample the activity
states.

Benedikt Zacher

birta

Bayesian Inference of Regulation of Transcriptional Activity

limmaAnalysis-methods function

<dl> <dt><code>signature(dat = "ExpressionSet", design = "matrix", contrasts = "character")</code></dt><dd>
Generic function for objects of class ExpressionSet.
</dd> <dt><code>signature(dat = "matrix", design = "matrix", contrasts = "character")</code></dt><dd>
Generic function for objects of class matrix.
</dd> </dl>

Methods

Generic methods for function <code>limmaAnalysis</code> in package <pkg>birta</pkg>. The expression data can be stored in a matrix or an ExpressionSet.

limmaAnalysis-methods: Methods for Function `limmaAnalysis` in Package birta

Description

Arguments

Methods