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bisque (version 1.0.2)

Approximate Bayesian Inference via Sparse Grid Quadrature Evaluation (BISQuE) for Hierarchical Models

Description

Implementation of the 'bisque' strategy for approximate Bayesian posterior inference. See Hewitt and Hoeting (2019) for complete details. 'bisque' combines conditioning with sparse grid quadrature rules to approximate marginal posterior quantities of hierarchical Bayesian models. The resulting approximations are computationally efficient for many hierarchical Bayesian models. The 'bisque' package allows approximate posterior inference for custom models; users only need to specify the conditional densities required for the approximation.

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Version

Install

install.packages('bisque')

Monthly Downloads

201

Version

1.0.2

License

GPL-3

Maintainer

Joshua Hewitt

Last Published

February 6th, 2020

Functions in bisque (1.0.2)

sFit

Fit a spatially mean-zero spatial Gaussian process model
sKrig

Draw posterior predictive samples from a spatial Gaussian process model
wMix

Construct a weighted mixture object
mergePars

Merge pre-computed components of f(theta1 | theta2, X)
logjac

Wrapper to abstractly evaluate log-Jacobian functions for transforms
furseals

Data from a capture-recapture study of fur seal pups
tx

Named transformation functions
wBuild

Derive parameters for building integration grids
dmix

Evaluate a mixture density
createLocScaleGrid

Create a centered and scaled sparse integration grid
jac.invlogit

Jacobian for logit transform
jac.log

Jacobian for log transform
itx

Named inverse transformation functions
jac.exp

Jacobian for exponential transform
emix

Compute expectations via weighted mixtures
kCompute

Use sparse grid quadrature techniques to integrate (unnormalized) densities
jac.logit

Jacobian for logit transform