bnlearn (version 4.1)

bn.boot: Parametric and nonparametric bootstrap of Bayesian networks

Description

Apply a user-specified function to the Bayesian network structures learned from bootstrap samples of the original data.

Usage

bn.boot(data, statistic, R = 200, m = nrow(data), sim = "ordinary",
  algorithm, algorithm.args = list(), statistic.args = list(),
  cluster = NULL, debug = FALSE)

Arguments

data

a data frame containing the variables in the model.

statistic

a function or a character string (the name of a function) to be applied to each bootstrap replicate.

R

a positive integer, the number of bootstrap replicates.

m

a positive integer, the size of each bootstrap replicate.

sim

a character string indicating the type of simulation required. Possible values are "ordinary" (the default, for nonparametric bootstrap) and "parametric".

algorithm

a character string, the learning algorithm to be applied to the bootstrap replicates. Possible values are gs, iamb, fast.iamb, inter.iamb, mmpc, hc, tabu, mmhc and rsmax2. See bnlearn-package and documentation of each algorithm for details.

algorithm.args

a list of extra arguments to be passed to the learning algorithm.

statistic.args

a list of extra arguments to be passed to the function specified by statistic.

cluster

an optional cluster object from package parallel. See parallel integration for details and a simple example.

debug

a boolean value. If TRUE a lot of debugging output is printed; otherwise the function is completely silent.

Value

A list containing the results of the calls to statistic.

Details

The first argument of statistic is the bn object encoding the network structure learned from the bootstrap sample; the arguments specified in statistics.args are extracted from the list and passed to statitstics as the 2nd, 3rd, etc. arguments.

References

Friedman N, Goldszmidt M, Wyner A (1999). "Data Analysis with Bayesian Networks: A Bootstrap Approach". In "UAI '99: Proceedings of the 15th Annual Conference on Uncertainty in Artificial Intelligence", pp. 196-201. Morgan Kaufmann.

See Also

bn.cv, rbn.

Examples

## Not run: ------------------------------------
# data(learning.test)
# bn.boot(data = learning.test, R = 2, m = 500, algorithm = "gs",
#   statistic = arcs)
## ---------------------------------------------