coloc (version 3.2-1)

coloc.abf.datasets: Bayesian colocalisation analysis using data.frames

Description

Bayesian colocalisation analysis using data.frames

Usage

coloc.abf.datasets(df1, df2, snps = intersect(setdiff(colnames(df1),
  response1), setdiff(colnames(df2), response2)), response1 = "Y",
  response2 = "Y", ...)

Arguments

df1

dataset 1

df2

dataset 2

snps

col.names for snps

response1

col.name for response in dataset 1

response2

col.name for response in dataset 2

...

parameters passed to coloc.abf.snpStats

Value

output of coloc.abf

Details

Converts genetic data to snpStats objects, generates p values via score tests, then runs coloc.abf