combine.abf

prior probability a SNP is associated with trait 1, default 1e-4

prior probability a SNP is associated with trait 2, default 1e-4

prior probability a SNP is associated with both traits, default 1e-5

Internal function, calculate posterior probabilities for configurations, given logABFs for each SNP and prior probs

Performs the colocalisation tests described in
Plagnol et al (2009) <doi:10.1093/biostatistics/kxn039>,
Wallace et al (2013) <doi:10.1002/gepi.21765> and
Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>.

Chris Wallace

combine.abf: combine.abf

Description

Usage

Arguments

Value