otu_to_taxonomy

Transform OTUs to their taxonomic label

Statistical modeling for correlated count data using the beta-binomial distribution, described in Martin et al. (2020) <doi:10.1214/19-AOAS1283>. It allows for both mean and overdispersion covariates.

Amy D Willis

corncob

Count Regression for Correlated Observations with the
Beta-Binomial

Bryan D Martin

Daniela Witten

Sarah Teichman

Thomas W Yee

Xiangjie Xue

otu_to_taxonomy function

<dl><dt>OTU</dt>
<dd>String vector. Names of OTU labels in <code>data</code></dd>
<dt>data</dt>
<dd><code>phyloseq</code> object with a taxonomy table</dd>
<dt>level</dt>
<dd>(Optional). Character vector. Desired taxonomic levels for output.</dd></dl>

Arguments

Transform OTUs to their taxonomic label — otu_to_taxonomy

<dl>

<dt>OTU</dt>
<dd>String vector. Names of OTU labels in <code>data</code></dd>


<dt>data</dt>
<dd><code>phyloseq</code> object with a taxonomy table</dd>


<dt>level</dt>
<dd>(Optional). Character vector. Desired taxonomic levels for output.</dd>

</dl>

otu_to_taxonomy: Transform OTUs to their taxonomic label

Description

Usage

Value

Arguments