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destiny (version 2.0.4)

Creates diffusion maps

Description

Create and plot diffusion maps.

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Version

Install

install.packages('destiny')

Version

2.0.4

License

GPL

Maintainer

Philipp Angerer

Last Published

April 21st, 2017

Functions in destiny (2.0.4)

coercions

Coercion methods
destiny

Create and plot diffusion maps
DiffusionMap methods

DiffusionMap methods
dm_predict

Predict new data points using an existing DiffusionMap. The resulting matrix can be used in
DiffusionMap accessors

DiffusionMap accession methods
DiffusionMap class

Create a diffusion map of cells
destiny-deprecated

Compatibility versions of functions for destiny 1.x scripts
cube_helix

Sequential color palette using the cube helix system
ExpressionSet helpers

Convert object to
extractions

Extraction methods
find_tips

Find tips in a DiffusionMap object
guo

Guo at al. mouse embryonic stem cell qPCR data
find_dm_k

Find a suitable k
find_sigmas

Calculate the average dimensionality for m different gaussian kernel widths (
DPT

Diffusion Pseudo Time
eig_decomp

Fast eigen decomposition using ARPACK
DPT matrix methods

DPT Matrix methods
DPT methods

DPT methods
destiny generics

destiny generics
colorlegend

Color legend
updateObject-method

Update old
plot.Sigmas

Plot
plot.DiffusionMap

3D or 2D plot of diffusion map
l_which

Logical which
Sigmas class

Sigmas Object
random_root

Find a random root cell index
plot.DPT

Plot DPT