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destiny (version 2.0.4)

guo: Guo at al. mouse embryonic stem cell qPCR data

Description

Gene expression data of 48 genes and an annotation column $num_cells containing the cell stage at which the embryos were harvested.

Usage

data(guo)
data(guo_norm)

Arguments

Value

an ExpressionSet with 48 features and 428 samples containing qPCR Ct values and a "num.cells" sample annotation.

Format

An ExpressionSet with 48 features, 428 samples and 2 phenoData annotations.

Details

The data is normalized using the mean of two housekeeping genes. The difference between guo and guo_norm is the LoD being set to 10 in the former, making it usable with the censor_val parameter of DiffusionMap.

References

http://www.sciencedirect.com/science/article/pii/S1534580710001103