bethe.tree

Generates a Bethe tree with given tips, inner edge lengths, and outgroup.

datagen

Geodesic distance between phylogenetic trees and
associated functions. The theoretical background of 'distory'
is published in Billera et al. (2001) "Geometry of the space of
phylogenetic trees." <doi:10.1006/aama.2001.0759>.

Emmanuel Paradis

distory

Distance Between Phylogenetic Histories

John Chakerian

Susan Holmes

bethe.tree function

<dl> <dt>tips</dt>
<dd>A list of tip names as a character vector. Should be a power of 2. All
 tip names must be distinct.</dd> <dt>level.lengths</dt>
<dd>Edge lengths for each level, counted from the bottom up. NULL means a
 default of 1. If the vector isn't long enough, the last value will be
 repeated as necessary.</dd> <dt>outgroup</dt>
<dd>The tip label for the outgroup.</dd> <dt>outgroup.dist</dt>
<dd>The distance of the outgroup from the root.</dd></dl>

Arguments

Author

Bethe Tree — bethe.tree

<dl>

 <dt>tips</dt>
<dd>A list of tip names as a character vector. Should be a power of 2. All
 tip names must be distinct.</dd>

 <dt>level.lengths</dt>
<dd>Edge lengths for each level, counted from the bottom up. NULL means a
 default of 1. If the vector isn't long enough, the last value will be
 repeated as necessary.</dd>

 <dt>outgroup</dt>
<dd>The tip label for the outgroup.</dd>

 <dt>outgroup.dist</dt>
<dd>The distance of the outgroup from the root.</dd>

</dl>

bethe.tree: Bethe Tree

Description

Usage

Value

Arguments

Author

Details

References

See Also

Examples