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dpcR (version 0.1.2-1)

Digital PCR Analysis

Description

Analysis, visualisation and simulation of digital PCR experiments.

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Version

Install

install.packages('dpcR')

Monthly Downloads

117

Version

0.1.2-1

License

GPL-2

Maintainer

Michal Burdukiewicz

Last Published

July 2nd, 2014

Functions in dpcR (0.1.2-1)

dpcr_density

Calculate Density of Digital PCR
dpcR-package

Digital PCR Analysis
qpcrpp-class

Class "qpcrpp"
show-methods

Methods for Function show
create_dpcr

Create dpcR object
test_peaks-methods

Peak Test
adpcr2ppp

Convert adpcr to ppp
pds_raw

Plasmid dilution series raw data
plot_panel

Plot Panel
ddpcr-class

Class "ddpcr"
pds

Plasmid dilution series results
plot-qpcrpp

Plot qpcrpp objects
many_peaks

Artificial data set with many peaks
qpcr2pp

qPCR to Poisson Process
qpcr_analyser-methods

qPCR Analyser
moments-methods

Calculate Moments of Poisson Distribution
sim_adpcr

Simulate Array Digital PCR
compare_dens

Plot and Compare Densities
test_panel

Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
test_ratio

Rate ratio test
limit_cq

Limit Cy0 values
summary-methods

Methods for Function summary
extract_dpcr

Extract Digital PCR Experiment
adpcr-class

Class "adpcr"
bioamp

A function to analyze plot the raw data from a BioRad droplet digital PCR experiment
dpcr_density_gui

Digital PCR Density Graphical User Interface
plot_vic_fam

Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
sim_ddpcr

Simulate Droplet Digital PCR