hgnc2pfam.df

A dataset containing the mapping table between Hugo symbol, UniProt ID, and
Pfam ACC.

datasets

Interface for 'g3-lollipop' 'JavaScript' library.
Visualize genetic mutation data using an interactive lollipop diagram in 'RStudio' or your web browser.

Xin Guo

g3viz

Interactively Visualize Genetic Mutation Data using a
Lollipop-Diagram

Rener Zhang

Ruining Zhu

Feng Zhao

hgnc2pfam.df function

A data frame with columns:<dl>
 <dt>symbol</dt>
<dd>Gene symbol</dd> <dt>uniprot</dt>
<dd>UniProt ID</dd> <dt>length</dt>
<dd>protein length</dd> <dt>start</dt>
<dd>starting position of Pfam domain</dd> <dt>end</dt>
<dd>ending position of Pfam domain</dd> <dt>hmm.acc</dt>
<dd>Pfam accession number</dd> <dt>hmm.name</dt>
<dd>Pfam name</dd> <dt>type</dt>
<dd>Pfam type, i.e., domain/family/motif/repeat/disordered/coiled-coil</dd>
</dl>

Format

Mapping table between gene.symbol, uniprot.id, and pfam — hgnc2pfam.df

A data frame with columns:<dl>
 <dt>symbol</dt>
<dd>Gene symbol</dd>

 <dt>uniprot</dt>
<dd>UniProt ID</dd>

 <dt>length</dt>
<dd>protein length</dd>

 <dt>start</dt>
<dd>starting position of Pfam domain</dd>

 <dt>end</dt>
<dd>ending position of Pfam domain</dd>

 <dt>hmm.acc</dt>
<dd>Pfam accession number</dd>

 <dt>hmm.name</dt>
<dd>Pfam name</dd>

 <dt>type</dt>
<dd>Pfam type, i.e., domain/family/motif/repeat/disordered/coiled-coil</dd>


</dl>

hgnc2pfam.df: Mapping table between gene.symbol, uniprot.id, and pfam

Description

Usage

Arguments

Format

Examples