Learn R Programming

g3viz (version 1.2.0)

Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram

Description

Interface for 'g3-lollipop' 'JavaScript' library. Visualize genetic mutation data using an interactive lollipop diagram in 'RStudio' or your web browser.

Copy Link

Version

Install

install.packages('g3viz')

Monthly Downloads

349

Version

1.2.0

License

MIT + file LICENSE

Issues

18

Pull Requests

0

Stars

29

Forks

19

Maintainer

Xin Guo

Last Published

September 4th, 2024

Functions in g3viz (1.2.0)

getMutationsFromCbioportal

Query cancer genomic mutation data from cBioPortal
hgnc2uniprot

Mapping from Hugo symbol to UniProt IDs
g3Lollipop.theme

G3Lollipop chart options of built-in themes.
g3Lollipop-shiny

Shiny bindings for g3Lollipop
mapMutationTypeToMutationClass

Map from mutation type (aka, variant classification) to mutation class
guessMAFColumnName

Guess column name for MAF file
g3Lollipop

Render g3lollipop diagram for the given mutation data
hgnc2pfam

Map from Hugo symbol to Pfam domains
hgnc2pfam.df

Mapping table between gene.symbol, uniprot.id, and pfam
g3Lollipop.options

G3Lollipop plot options
readMAF

Read MAF file
uniprot2pfam

From UniProt ID to Pfam-A domain composition
mutation.table.df

Default mapping table between mutation type (aka, variant classification) to mutation class
parseProteinChange

Extract amino_acid_position from Protein_Change