parseProteinChange

Parse amino_acid_position according to HGVSp_short format. 
 For example, p.Q16Rfs*28, amino-acid position is 16.
 See <a href="http://varnomen.hgvs.org/recommendations/protein/">http://varnomen.hgvs.org/recommendations/protein/</a> or <a href="https://www.hgvs.org/mutnomen/recs-prot.html">https://www.hgvs.org/mutnomen/recs-prot.html</a>.

Interface for 'g3-lollipop' 'JavaScript' library.
Visualize genetic mutation data using an interactive lollipop diagram in 'RStudio' or your web browser.

Xin Guo

g3viz

Interactively Visualize Genetic Mutation Data using a
Lollipop-Diagram

Rener Zhang

Ruining Zhu

Feng Zhao

parseProteinChange function

<dl><dt>protein.change.vec</dt>
<dd>a vector of strings with protein change information, usually in HGVSp_short format.</dd>
<dt>mutation.class.vec</dt>
<dd>a vector of strings with mutation class (or so-called variant classification) information.</dd></dl>

Arguments

Parse amino_acid_position according to HGVSp_short format. 
 For example, p.Q16Rfs*28, amino-acid position is 16.
 See <a href='http://varnomen.hgvs.org/recommendations/protein/'>http://varnomen.hgvs.org/recommendations/protein/</a> or <a href='https://www.hgvs.org/mutnomen/recs-prot.html'>https://www.hgvs.org/mutnomen/recs-prot.html</a>.

Extract amino_acid_position from Protein_Change — parseProteinChange

<dl>

<dt>protein.change.vec</dt>
<dd>a vector of strings with protein change information, usually in HGVSp_short format.</dd>


<dt>mutation.class.vec</dt>
<dd>a vector of strings with mutation class (or so-called variant classification) information.</dd>

</dl>

parseProteinChange: Extract amino_acid_position from Protein_Change

Description

Usage

Value

Arguments