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uniprot2pfam: From UniProt ID to Pfam-A domain composition

Description

Map from UniProt ID to Pfam-A domain composition.

Usage

uniprot2pfam(uniprot.id)

Value

a data frame with columns

  • uniprot --- UniProt ID

  • length --- protein length

  • hmm.acc --- accession number of Pfam HMM model, e.g., PF08563

  • hmm.name --- Pfam name, e.g., P53_TAD

  • start --- Pfam domain start position

  • end --- Pfam domain end position

  • type --- Pfam type, including domain/motif/family

Arguments

uniprot.id

UniProt ID

Examples

Run this code
uniprot2pfam("Q5VWM5")  # PRAMEF9; PRAMEF15
uniprot2pfam("P04637")

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